Currently Being ModeratedJan 16, 2013 11:45 AM (in response to PokemonFan1987)
TM only does one full system backup when it first starts.. all other backups are incremental and so will generally only involve the user folders.
To force it to backup everything, delete the old backup or use a different target disk and it will start over with a new full backup.
Currently Being ModeratedJan 16, 2013 7:15 PM (in response to PokemonFan1987)
Reset Time Machine.
Verify local disk and wipe the TC and start over.