I ran in to this yesterday. I still do not know what caused it, but I thought I would share my journey to resolution.
Both my standard-sized and 2x-sized files were created in Photoshop from the same .psd file at the 2x dimension size, which I ensured had even-numbered dimensions in both height and width. The 2x file is created by saving the .psd as a .jpg and setting the jpg compression so that the resulting file size will be less than 250KB. The standard file is created by applying a 50% image size reduction and saving it as a jpg file with compression such that the resulting file size will be less than 250KB.
In my iAD Producer project file, on the Assets pane I had right-clicked to Import... and selected the standard sized file and the @2x sized file ("Splash background.jpg" and "Splash background@2x.jpg").
Then I worked for many hours, many other asset imports, adding pages, actions, testing, etc. Eventually I noticed when viewing the overview that my project had some warnings in the Properties pane of the Inspector. The only one I could not resolve was the "Splash Background" had incompatible dimensions -- which made no sense. I right clicked on it in the list of assets and chose "Reveal original in Finder" which preselected the two files and I showed the Get Info for both: As expected, the dimensions were both even and the @2x file had dimensions exactly 2x the standard file size.
Nothing I tried within my iAd Producer file would allow me to update the two files to clear the warning.
Eventually I started a new iAd Producer project and imported these two same files. I applied them to the Shared Layers, Background, and there were no warnings.
Feeling vindicated but still stumped I switched focus back to my (still open) original iAd Producer project file and noticed right away that to the right of the asset listing for my "Splash Background" asset was the reload circular arrow! I right-clicked, chose Update (which had never been available before) and the warning message went away.
The only original visual indication I had that something in iAd Producer was amiss was at the top of the Assets pane, where information about the selected asset is shown. On my "Splash Background" both the 1x and 2x files were listed with a file size of 185KB, which, if correct, would be a curious fluke of compression settings. In fact, using Finder's Get Info I could see that the file sizes were 203KB and 236KB respectively. After iAd Producer allowed me to Update the asset, the information about the selected asset showed correct file sizes for the two files.
So I can't really understand why importing the files in question into a new project caused the original project to notice it's understanding of the files didn't match what the files really look like, but maybe this little bit of voodoo will help someone else clear the warning they, too, are battling.