Back with this problem trying to solve it. Just had more files drop off last night and the night before. Very strange. Here is the result of etrecheck that I received:
EtreCheck version: 3.0.1 (304)
Report generated 2016-08-17 09:48:38
Download EtreCheck from https://etrecheck.com
Runtime 2:55
Performance: Excellent
Click the [Support] links for help with non-Apple products.
Click the [Details] links for more information about that line.
Problem: Other problem
Description:
Files are dropping off on drives
Hardware Information: ⓘ
Mac mini Server (Late 2012)
[Technical Specifications] - [User Guide] - [Warranty & Service]
Mac mini - model: Macmini6,2
1 2.3 GHz Intel Core i7 CPU: 4-core
16 GB RAM Upgradeable - [Instructions]
BANK 0/DIMM0
8 GB DDR3 1600 MHz ok
BANK 1/DIMM0
8 GB DDR3 1600 MHz ok
Bluetooth: Good - Handoff/Airdrop2 supported
Wireless: en1: 802.11 a/b/g/n
Video Information: ⓘ
Intel HD Graphics 4000
Acer B243W 1920 x 1200 @ 60 Hz
System Software: ⓘ
OS X Yosemite 10.10.5 (14F27) - Time since boot: about 317 days
Disk Information: ⓘ
APPLE HDD HTS541010A9E662 disk0 : (1 TB) (Rotational)
EFI (disk0s1) <not mounted> : 210 MB
Server HD (disk0s2) / : 249.84 GB (147.55 GB free)
Recovery HD (disk0s3) <not mounted> [Recovery]: 650 MB
Photos (disk0s4) /Volumes/Photos : 249.84 GB (233.03 GB free)
Pages (disk0s5) /Volumes/Pages : 249.84 GB (242.58 GB free)
Typesetting (disk0s6) /Volumes/Typesetting : 124.92 GB (36.19 GB free)
Editorial (disk0s7) /Volumes/Editorial : 124.38 GB (75.69 GB free)
APPLE HDD HTS541010A9E662 disk1 : (1 TB) (Rotational)
EFI (disk1s1) <not mounted> : 210 MB
Volume_1 (disk1s2) /Volumes/Volume_1 : 300.06 GB (90.01 GB free)
Volume_2 (disk1s3) /Volumes/Volume_2 : 300.06 GB (229.68 GB free)
SpectraPrint (disk1s4) /Volumes/SpectraPrint : 200.04 GB (113.78 GB free)
Education (disk1s5) /Volumes/Education : 100.02 GB (92.80 GB free)
Fonts (disk1s6) /Volumes/Fonts : 99.14 GB (95.36 GB free)
WDC WD20EURS-63S48Y0 disk3 : (2 TB) (Rotational)
EFI (disk3s1) <not mounted> : 210 MB
disk3s2 (disk3s2) <not mounted> : 2.00 TB
Boot OS X (disk3s3) <not mounted> : 134 MB
WDC WD40EFRX-68WT0N0 disk2 : (4 TB) (Rotational)
EFI (disk2s1) <not mounted> : 210 MB
disk2s2 (disk2s2) <not mounted> : 4.00 TB
Boot OS X (disk2s3) <not mounted> : 134 MB
WDC WD40EFRX-68WT0N0 disk4 : (4 TB) (Rotational)
EFI (disk4s1) <not mounted> : 210 MB
disk4s2 (disk4s2) <not mounted> : 4.00 TB
Boot OS X (disk4s3) <not mounted> : 134 MB
WDC WD40EFRX-68WT0N0 disk5 : (4 TB) (Rotational)
EFI (disk5s1) <not mounted> : 210 MB
disk5s2 (disk5s2) <not mounted> : 4.00 TB
Boot OS X (disk5s3) <not mounted> : 134 MB
WDC WD20EURS-63S48Y0 disk6 : (2 TB) (Rotational)
EFI (disk6s1) <not mounted> : 210 MB
disk6s2 (disk6s2) <not mounted> : 2.00 TB
Boot OS X (disk6s3) <not mounted> : 134 MB
WDC WD40EFRX-68WT0N0 disk7 : (4 TB) (Rotational)
EFI (disk7s1) <not mounted> : 210 MB
disk7s2 (disk7s2) <not mounted> : 4.00 TB
Boot OS X (disk7s3) <not mounted> : 134 MB
WDC WD40EFRX-68WT0N0 disk10 : (4 TB) (Rotational)
EFI (disk10s1) <not mounted> : 210 MB
disk10s2 (disk10s2) <not mounted> : 4.00 TB
Boot OS X (disk10s3) <not mounted> : 134 MB
WDC WD40EFRX-68WT0N0 disk8 : (4 TB) (Rotational)
EFI (disk8s1) <not mounted> : 210 MB
disk8s2 (disk8s2) <not mounted> : 4.00 TB
Boot OS X (disk8s3) <not mounted> : 134 MB
USB Information: ⓘ
Apple Inc. BRCM20702 Hub
Apple Inc. Bluetooth USB Host Controller
Apple, Inc. IR Receiver
Thunderbolt Information: ⓘ
Apple Inc. thunderbolt_bus
Western Digital My Book Thunderbolt Duo
Western Digital My Book Thunderbolt Duo
Western Digital My Book Thunderbolt Duo
Western Digital My Book Thunderbolt Duo
Gatekeeper: ⓘ
Mac App Store and identified developers
Unknown Files: ⓘ
/Library/LaunchDaemons/com.apple.serverd.plist
/Library/PrivilegedHelperTools/com.apple.serverd
~/Library/LaunchAgents/com.apple.serveralertproxy.plist
/Applications/Server.app/Contents/Library/LaunchServices/com.apple.serveralertp roxy
2 unknown files found. [Check files]
Startup Items: ⓘ
PureFTPD: Path: /Library/StartupItems/PureFTPD
Startup items are obsolete in OS X Yosemite
System Launch Agents: ⓘ
[not loaded] 6 Apple tasks
[loaded] 134 Apple tasks
[running] 71 Apple tasks
System Launch Daemons: ⓘ
[not loaded] 44 Apple tasks
[loaded] 131 Apple tasks
[running] 87 Apple tasks
Launch Daemons: ⓘ
[running] com.apple.serverd.plist (2015-07-03)
[loaded] com.retrospect.engine.updater.plist (2013-06-04) - /tmp/retro/engineupdater.sh: Executable not found!
[running] com.retrospect.retroengine.plist (2013-06-04)
[not loaded] com.retrospect.retroisa.plist (2014-02-13)
User Launch Agents: ⓘ
[loaded] com.apple.serveralertproxy.plist (2015-11-10)
[loaded] com.shirtpocket.backupbytime.plist (2015-03-16) [Support]
User Login Items: ⓘ
iTunesHelper Application (/Applications/iTunes.app/Contents/MacOS/iTunesHelper.app)
WDDriveUtilityHelper Application (/Applications/WD Drive Utilities.app/Contents/WDDriveUtilityHelper.app)
Internet Plug-ins: ⓘ
Default Browser: 600 - SDK 10.10 (2015-10-05)
QuickTime Plugin: 7.7.3 (2015-10-05)
3rd Party Preference Panes: ⓘ
Retrospect (2013-09-01) [Support]
Time Machine: ⓘ
Skip System Files: NO
Mobile backups: OFF
Auto backup: NO - Auto backup turned off
Volumes being backed up:
Server HD: Disk size: 249.84 GB Disk used: 102.29 GB
Destinations:
BACKUPS [Local]
Total size: 4.00 TB
Total number of backups: 0
Oldest backup: -
Last backup: -
Size of backup disk: Excellent
Backup size 4.00 TB > (Disk size 249.84 GB X 3)
Top Processes by CPU: ⓘ
12% kernel_task
7% Retrospect
7% WindowServer
2% fontd
1% Finder
Top Processes by Memory: ⓘ
3.49 GB kernel_task
492 MB softwareupdated
344 MB com.apple.WebKit.WebContent
295 MB mds
197 MB Retrospect
Virtual Memory Information: ⓘ
679 MB Free RAM
15.00 GB Used RAM (7.01 GB Cached)
743 MB Swap Used
Not sure what I am looking for. The Server log doesn't report back the day before and as far as I know, no scripts are running. We use Retrospect for back ups and without those, we would really be in bad shape.