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Aug 14, 2016 8:13 AM in response to ka30by King_Penguin,They aren't included in the actual backup. As well as doing a backup did you copy them over to your Mac i.e. did you do File > Devices > Transfer Purchases in iTunes (that should copy PDFs and/or epubs in the iBooks app on your phone, not just actual ibooks and other purchases), and then also did File > Move Books From iTunes in your Mac's iBooks app ?