Hi Bob, sorry for the late response. I purchased a hard drive to clone my iMac before I started tinkering, and made a new back up too. So here is my etrecheck report, I hope you can work out what is going on. Thank you.
EtreCheck version: 3.0.3 (307)
Report generated 2016-09-06 00:07:57
Download EtreCheck from https://etrecheck.com
Runtime 2:18
Performance: Excellent
Click the [Support] links for help with non-Apple products.
Click the [Details] links for more information about that line.
Problem: Apps are crashing
Description:
Getting extremely hot
Wont wake up from sleep
Empty Trash freezing
Wifi disconnects and searches on and on
Finder unresponsive
Various apps won’t launch, keep bouncing in dock
Hardware Information: ⓘ
iMac (27-inch, Mid 2011)
[Technical Specifications] - [User Guide] - [Warranty & Service]
iMac - model: iMac12,2
1 2.7 GHz Intel Core i5 CPU: 4-core
12 GB RAM
BANK 0/DIMM0
2 GB DDR3 1333 MHz ok
BANK 1/DIMM0
8 GB DDR3 1333 MHz ok
BANK 0/DIMM1
Empty
BANK 1/DIMM1
2 GB DDR3 1333 MHz ok
Bluetooth: Old - Handoff/Airdrop2 not supported
Wireless: Unknown
Video Information: ⓘ
AMD Radeon HD 6770M - VRAM: 512 MB
iMac 2560 x 1440
System Software: ⓘ
OS X Mountain Lion 10.8.5 (12F45) - Time since boot: less than an hour
Disk Information: ⓘ
WDC WD1001FALS-403AA0 disk0 : (1 TB) (Rotational)
disk0s1 (disk0s1) <not mounted> : 210 MB
Macintosh HD (disk0s2) / : 999.35 GB (78.35 GB free)
Recovery HD (disk0s3) <not mounted> [Recovery]: 650 MB
HL-DT-STDVDRW GA32N ()
USB Information: ⓘ
Apple Internal Memory Card Reader
Apple Computer, Inc. IR Receiver
Apple Inc. FaceTime HD Camera (Built-in)
Apple Inc. BRCM2046 Hub
Apple Inc. Bluetooth USB Host Controller
Thunderbolt Information: ⓘ
Apple Inc. thunderbolt_bus
Gatekeeper: ⓘ
Mac App Store and identified developers
Kernel Extensions: ⓘ
/System/Library/Extensions
[not loaded] com.tomtom.driver.UsbEthernetGadget (1.0.0d1 - 2016-07-14) [Support]
System Launch Agents: ⓘ
[not loaded] 4 Apple tasks
[loaded] 118 Apple tasks
[running] 22 Apple tasks
System Launch Daemons: ⓘ
[not loaded] 59 Apple tasks
[loaded] 128 Apple tasks
[running] 48 Apple tasks
Launch Agents: ⓘ
[not loaded] com.adobe.AAM.Updater-1.0.plist (2012-05-26) [Support]
[loaded] com.adobe.CS4ServiceManager.plist (2010-06-28) [Support]
[loaded] com.oracle.java.Java-Updater.plist (2013-02-08) [Support]
Launch Daemons: ⓘ
[running] com.WesternDigital.WDSmartWareD.plist (2012-06-14) [Support]
[loaded] com.adobe.SwitchBoard.plist (2012-05-26) [Support]
[loaded] com.adobe.fpsaud.plist (2016-06-29) [Support]
[loaded] com.adobe.versioncueCS4.plist (2012-01-26) [Support]
[loaded] com.apple.aelwriter.plist (2010-07-15)
[loaded] com.bombich.ccc.plist (2011-10-07) [Support]
[loaded] com.bombich.ccchelper.plist (2016-09-04) [Support]
[not loaded] com.gopro.stereomodestatus.plist (2013-09-10) [Support]
[loaded] com.microsoft.office.licensing.helper.plist (2011-03-10) [Support]
[loaded] com.oracle.java.Helper-Tool.plist (2013-02-08) [Support]
[running] com.wdc.WDDMservice.plist (2012-06-14) [Support]
User Launch Agents: ⓘ
[loaded] com.adobe.AAM.Updater-1.0.plist (2012-05-27) [Support]
[loaded] com.adobe.ARM.[...].plist (2012-02-01) [Support]
[loaded] com.apple.AddressBook.ScheduledSync.PHXCardDAVSource.91309A11-9086-4736-8945-58 46B7E8211A.plist (2012-10-10)
[loaded] com.facebook.videochat.[redacted].plist (2014-08-09)
[loaded] com.google.keystone.agent.plist (2016-07-12) [Support]
User Login Items: ⓘ
iTunesHelper Application (/Applications/iTunes.app/Contents/MacOS/iTunesHelper.app)
TomTomMyDriveConnectHelper Application (/Applications/TomTom MyDrive Connect.app/Contents/MacOS/TomTomMyDriveConnectHelper.app)
Garmin Express Service Application (/Applications/Garmin Express.app/Contents/Library/LoginItems/Garmin Express Service.app)
EpsonLowInkReminderAgent Application (/Applications/Epson Software/Epson Low Ink Reminder.app/Contents/EpsonLowInkReminderAgent.app)
EEventManager Application (/Applications/Epson Software/Event Manager.app/Contents/Resources/Assistants/Event Manager/EEventManager.app)
Internet Plug-ins: ⓘ
JavaAppletPlugin: Java 8 Update 91 build 14 (2016-06-17) Check version
FlashPlayer-10.6: 22.0.0.209 - SDK 10.9 (2016-08-22) [Support]
QuickTime Plugin: 7.7.1 (2014-07-31)
Flash Player: 22.0.0.209 - SDK 10.9 (2016-08-22) [Support]
AdobePDFViewer: 9.5.5 (2014-07-31) [Support]
SharePointBrowserPlugin: 14.2.2 - SDK 10.6 (2012-05-26) [Support]
Google Earth Web Plug-in: 6.1 (2011-10-17) [Support]
Silverlight: 5.1.41212.0 - SDK 10.6 (2016-05-12) [Support]
iPhotoPhotocast: 7.0 - SDK 10.8 (2013-05-10)
3rd Party Preference Panes: ⓘ
Adobe Version Cue CS4 (2012-01-26) [Support]
Flash Player (2016-06-29) [Support]
GoPro (2013-09-11) [Support]
Java (2016-06-17) [Support]
Time Machine: ⓘ
Skip System Files: NO
Mobile backups: OFF
Auto backup: NO - Auto backup turned off
Volumes being backed up:
Macintosh HD: Disk size: 999.35 GB Disk used: 921.00 GB
Destinations:
MyBook [Local]
Total size: 999.16 GB
Total number of backups: 4
Oldest backup: 18/02/2015 20:56
Last backup: 05/09/2016 17:34
Size of backup disk: Too small
Backup size 999.16 GB < (Disk used 921.00 GB X 3)
Top Processes by CPU: ⓘ
17% WebProcess
4% fontd
2% Safari
2% WindowServer
2% Garmin Express Service
Top Processes by Memory: ⓘ
725 MB WebProcess
184 MB Safari
135 MB mds
74 MB Dock
49 MB WDSmartWareD
Virtual Memory Information: ⓘ
8.57 GB Free RAM
3.43 GB Used RAM
0 B Swap Used
Diagnostics Information: ⓘ
Sep 6, 2016, 12:02:44 AM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-06-000244_[redact ed].crash
/System/Library/CoreServices/Dock.app/Contents/XPCServices/com.apple.dock.extra .xpc/Contents/MacOS/com.apple.dock.extra
Sep 6, 2016, 12:00:35 AM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-06-000035_[redact ed].crash
Sep 5, 2016, 11:59:56 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-235956_[redact ed].crash
Sep 5, 2016, 11:59:45 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-235945_[redact ed].crash
Sep 5, 2016, 11:59:35 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-235935_[redact ed].crash
Sep 5, 2016, 11:58:01 PM Self test - passed
Sep 5, 2016, 11:50:48 PM /Library/Logs/DiagnosticReports/firefox_2016-09-05-235048_[redacted].hang
/Applications/Firefox.app/Contents/MacOS/firefox
Sep 5, 2016, 11:44:34 PM /Library/Logs/DiagnosticReports/firefox_2016-09-05-234434_[redacted].hang
Sep 5, 2016, 11:44:28 PM ~/Library/Logs/DiagnosticReports/plugin-container_2016-09-05-234428_[redacted]. crash
org.mozilla.plugincontainer - /Applications/Firefox.app/Contents/MacOS/plugin-container.app/Contents/MacOS/pl ugin-container
Sep 5, 2016, 11:28:55 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-232855_[redact ed].crash
Sep 5, 2016, 09:39:59 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-213959_[redact ed].crash
Sep 5, 2016, 09:12:25 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-211225_[redact ed].crash
Sep 5, 2016, 09:05:52 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-210552_[redact ed].crash
Sep 5, 2016, 09:03:50 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-210350_[redact ed].crash
Sep 5, 2016, 09:03:37 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-210337_[redact ed].crash
Sep 5, 2016, 09:03:02 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-210302_[redact ed].crash
Sep 5, 2016, 09:02:52 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-210252_[redact ed].crash
Sep 5, 2016, 09:02:50 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-210250_[redact ed].crash
Sep 5, 2016, 07:40:46 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-194046_[redact ed].crash
Sep 5, 2016, 05:24:15 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-172415_[redact ed].crash
Sep 5, 2016, 04:50:04 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-165004_[redact ed].crash
Sep 5, 2016, 04:41:34 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-164134_[redact ed].crash
Sep 5, 2016, 04:39:20 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-163920_[redact ed].crash
Sep 5, 2016, 04:38:48 PM ~/Library/Logs/DiagnosticReports/com.apple.dock.extra_2016-09-05-163848_[redact ed].crash
Sep 5, 2016, 02:15:34 AM /Library/Logs/DiagnosticReports/Carbon Copy Cloner_2016-09-05-021534_[redacted].hang
/Applications/Carbon Copy Cloner.app/Contents/MacOS/Carbon Copy Cloner