I have this issue too. I own two identical MacPro units running 10.4.10. They are set for the CPU to sleep after 1 hr, display after 15 mins. The "Put the hard disk(s) to sleep when possible" option in Energy Saver is OFF.
Despite the latter, after a certain length of time (not much more than 15mins), at least one hard drive(s) spin down (one machine has 3 drives, the other 2), stopping with a click (presumably head-locking). A few minutes later they do it again, adn so on indefinitely.
I am not disturbed by this so much as worrying that the drive(s) will suffer more wear by being spun up and down every few minutes than if they stayed either on or off. I would therefore like them to stay in one state or the other, and I feel that this should be determined by the Energy Saver setting of "Put the hard disk(s) to sleep when possible", which is currently apparently IGNORED. ie this appears to be a bug.
The response I get on one machine to the instruction "pmset -g" is :
Active Profiles:
AC Power -1*
Currently in use:
disksleep 180
hibernatemode 0
displaysleep 15
powerbutton 1
womp 1
sleep 60
autorestart 0
hibernatefile /var/vm/sleepimage
Hope this helps.
Has this been reported as a bug?
Drive in Bay 1 is the original WD2500JS (Macintosh HD)
Drive in Bay 2 is a third-party ST3500641AS
I can't tell you which one(s) I hear spinning down. It is rather hard to tell.
Thanks,
--Richard E