I have the same problem, but with a small twist.
When the computer fails to wake up, it doesn't restart...it just hangs there. I hit the power button to turn it off then back on again and nothing...after a few minutes I get the blinking folder with a question mark.
To get back running again I turn off then back on holding option and I can select Mac HD and it boots fine.
I saw something mentioned somewhere else that I of course can't find again about samba playing a role, and I did start noticing this after setting up file sharing using SMB. Of course, I set that up the 3rd day of having the computer, so you can't really tell.
So, is everyone sharing folders via SMB? Is anyone not?
My quick workaround is to set the computer to never go to sleep, but it's not ideal of course.