I ran in to something similar today. I had placed a lot of our fonts on a PC-based server, but my G4 running on 10.4.9 had no problem seeing the files correctly (LWFN, FFIL, etc.). However, we just purchased an Intel G5 running Leopard and it didn't recognize the fonts on the server. I copied the fonts onto a thumbdrive (from their home on the server)and plugged the drive into the Leopard G5. In the Finder window, they showed up properly, and when I copied into the Fonts folder on that machine, Fusion Suitcase handled them correctly. So, a little tedious, but definitely a life saver.