I like to start off fresh, and just to be safe, reformat the drive from Partitions tab, set the table to GUID, create one new HFS+ partition.
Or, use the drive for Windows only as Master Boot Record in Disk Utility.
With MacFUSE you can even format MBR disk partitions as NTFS.
I suspect someone did something not by the book before you got to it.
I never run as root, just normal administrative account.
When I want to strip a drive of partitions, I turn to SoftRAID (
http://www.softraid.com ) and zero the first/last 100 sectors so it is back to being just RAW disk. Then format it in Disk Utility. Also, SoftRAID can be used to start zeroing a drive and cancel safely at any time.
With Vista, I format a RAW drive from Vista DVD without using BootCamp Assistant.
Anything more than a minute is too long. There is a bug in Disk Utility where sometimes I have to quit and relaunch for new partitions to show up in DU. Or where resizing partitions. And possible to "lost communication with device" error.
Also, 10.5.0 and 10.5.1 Disk Utility seems less reliable and stable than 10.5.3+.
And best to restart sometimes before using new or resized partitions.