Just wanted to add my experiences with this... I took my MBP (15" Unibody, late 2008) to my nearest service centre (still a three hour round trip) and referred them to this video:
http://www.youtube.com/watch?v=Zxcnwi_mxK8They replaced the logic board under warranty, which disappointingly did not help. I took it straight back there the next day, they apologised and ordered another new logic board immediately, but then phoned up the next day to say that an Apple engineer had told them this behaviour is "normal" for this era of MBP, so they'd already sent back the new logic board and wanted me to collect the laptop unchanged!
Obviously it is not normal behaviour for what is supposed to be a premium computer, and after some complaining to Apple the store was told to replace the RAM and give it back... Again, no help, in fact the flickering seemed worse. Very disappointing. Four 3-hour round trips wasted.
I complained again and Apple agreed to have it collected and sent elsewhere for another logic board replacement. Over a week later, I get it back and the flickering is gone, at least for the three days I used it: unfortunately the headphone socket on the new logic board was broken, so I sent it back for yet another repair.
Logic boards used: 3
Logic boards with serious faults: 3
Weeks without my MacBook Pro: 4 and counting
Chances of next logic board fully working: ?
FWIW, I can't say I noticed any patterns in the blinking. It happened after hours of use or immediately after coming out of sleep, whether it was hot or stone cold, when typing / scrolling with the touchpad or not touching the machine at all, CPU busy or dormant, USB devices plugged in or not... Perhaps more often when it was hot... But generally random.