Since you have zero unix background, if there is a brick-and-mortar Apple Store within a reasonable commuting distance from you, you might just want to go there and have the Geniuses at the Genius Bar fix it. I don't think the Genius Bar charges anything for stuff like fixing file permissions, do they?
If you are seeing any subordinate directories in your Library/Mail with permissions that are NOT
drwx------, or any files whose permissions are NOT
-rw-r--r--, or any files with extension
.emlx whose permissions are NOT
-rw-------, then you would want to change the permissions and/or remove any unusual access control lists. ACLs are denoted with a "+" as the last character in the permissions.
To change a directory's permissions to become
drwx------, you would type
chmod 700 {directoryNameGoesHere}. To change a file's permissions to become
-rw-r--r--, you would type
chmod 644 {fileNameGoesHere}. To change a file's permissions to become
-rw-------, you would type
chmod 600 {fileNameGoesHere}. Use the trick about dragging multiple files or directories into the Terminal window to save yourself a lot of typing. You remember the "triplet" for owner/group/everyone with the read/write/execute permissions? Read=4, write=2, execute=1, so, for example, to get rw, its 4+2=6. Owner read+write, group/everyone read, is 644.
But if I were you, before I undertook that endeavor, you might want to post back with what you've got on a particular file or directory as an example and see if it can be compared to the permissions of someone else's equivalent file(s) or directory(ies). You sure don't want to dork it up any worse than what it may already be.
Removing or modifying ACLs, I haven't done that before, I'd have to read the documentation for the chmod command attentively to see how to do that. (
man chmod and use the up and down arrows to move and type
q to quit).
But the big question at this point would be, before you were to do anything else, do your permissions look to you like they are, in fact, dorked up?
If so, I would recommend option (a) Genius Bar, as a first choice, if that's the issue, given that you don't, at this juncture, have a very good unix background yet. If learning the Mac's unix is something that you think you might want to pursue, check out
http://www.osxfaq.com/Tutorials/LearningCenter/index.ws that will keep you busy for quite a while.