Mitch, to agree with David, neither your camcorder nor your software has anything to do with the strobing. At a minimum, you need a projector that has a variable speed control.
About a half-dozen years ago I started out with the same grand plan of converting to DVD all the 8mm and Super8 film various family members have stored in the back of their closet shelves. That turned out to be an expensive project. But worth it.
I started out by buying a projector at a local yard sale. That's when I found out just any projector will not work for recording film to videotape. So, after a bit of research, I ended up buying a variable speed projector on eBay.
That gave a much better result, but still wasn't perfect. I had the video I was recording of the projected movie play thru the camcorder to the largest tv we had at the time. So, as the projector was projecting and the camcorder was recording, I kept my eyes on the tv and my fingers on the projector's variable speed knob.
The result was good, but not perfect. First, a bit of parallax is introduced because the camcorder is offset to one side or the other of the projector. Second, constant monitoring of the video you're recording is required because a slight speed adjustment is required as soon as some flicker appears. Third, the focus isn't always the best, and some amount of the image around the edge of the original film isn't recorded.
In the meantime, all these relatives who shipped me their film based on my promise of great results were anxiously awaiting delivery, but I still wasn't satisfied with what I had to deliver.
So, after more research, I purchased
this projector. The CaptureMate software (sold seperately) syncs this projector with your camcorder and Mac, so each
individual movie frame is being recorded full frame, in focus, and you end up with a no flicker, no parallax and a .mov file ready for FCP.
Of course, as long I had the equipment to do quality film transfer, I added a little side business that has long since recovered the cost of the projector.
Have fun,
Tom T