Xt3rminater,
As you probably know, the fan speed should increase as the workload / temperature increases. My early '09 Mini seemed to have come with a defective fan, just would run about 1500rpm, even while encoding MP3s. I installed smcFanControl and was able to manually increase the fan speed. Here is one of several sites where you may download it:
http://download.cnet.com/smcFanControl/3000-18487_4-102230.html
Strangely, last week I noticed the fan WAS working correctly! It increased speed by itself to >3000rpm under some light video viewing. Don't know why, or how, it repaired itself!
Good luck!
Craig