I am new to Mac and need a foot in both Mac and PC worlds, so I definitely am pushing for the last bit of functionality out of Windows 7 on a BootCamp-created partition. I have the same problem all on this topic see: partial functionality of USB ports, including sporadic problems with my HP printer (now it sees it, now not) and worse, inability to run my virtual machines on USB hard drives through VMware Workstation when BootCamped.
WMware (and some HP software and other programs) interrogates the USB ports before allowing use. Since the port enumeration is messed up, USB VMs won't even start, and VMs on BootCamp partition run but have USB ports within the VM disabled. It's nice that VMware folks came up with a workaround for Workstation Version 7, but the problem remains for those with older versions of Workstation (me for example) and for other software.
Since I have VMware Fusion too (for Mac side), I could compare the same Win7 installation running on OS X side and BootCamp side. The OS X VM of Win7 is fine with USBs and has a very different list of USB devices and other "devices" in Device Manager. I see what looks like duplication of devices (many more of them) when BootCamped. This makes sense, because VMware Fusion gives OS X the job of running the hardware, and OS X is correctly interfacing with the Intel chips. What is probably going on is a less-than-perfect imitation of BIOS by the Mac firmware implementation through EFI, so the hardware is imperfectly operated. It could easily mean a firmware fix is needed, not just drivers. The Aug 26 firmware update fixed freezing/display problems, but not this.
I explained all this last week in an email to AppleCare support, including screen captures. I think the comparisons of the Win7 partition running differently in the two environments is pretty good evidence that Apple does need to send us a fix. I haven't heard back from Apple support yet on my long email. We shall see...