I had Java on my Mac Book
Unlike laptops/desktop computers, the iPad is a closed system and works like the iPhone/iPod. OS updates are provided via iTunes, and none have been announced yet besides iPhone OS 4 sometime in the fall. Apps can only be obtained via the app store.
None of Apple's mobile devices are expected to ever support either Java or Flash.
Are you sure you need Java (and not Javascript)? What kind of email system is it?