I have this issue too. I wanted to add that when listening with headphones the full volume beep is more like a blast, and is not only scary but actually hurts my ears. I worry about hearing damage and it's really upsetting. I've begun pulling my headphones off for a second after clicking play.
I'll add that once lossless files are playing, it doesn't seem to beep again until later.
If the lossless tracks stop loading (common) and a following track decides to play in lossless i'll get a mid-album beep when it begins.
I will try resetting the NVRAM and report back if it solves the problem for me.