Hi Tim,
it sound like you have a real work horse of a machine.
you could try a safeboot
http://support.apple.com/kb/ht1455
just booting ones into safe mode can fix lots of different issues
while in safe mode, check system profiler, see if it sees all the ram
reboot, see if it still sees all your ram
re-installing the os can resolve lots of issues. And like pointed out, 10.6 doesn't erase your computer when you re-install the os.
Message was edited by: TeenTitan