Showing hidden files is fine but that does not explain how Apple has sorted files into "System Data" versus the other categories. That sorting can vary depending on a number of factors so it doesn't make clear what is in "System Data." I would ignore "System Data" and instead figure out where you disk space has all gone.
From your screen shots, I see the following in your user account:
Desktop: 81 GB
Downloads: 76 GB
Documents: 16 GB
Library: 100 GB
Pictures: 36 GB
iCloud Drive Archive: 46 GB
Other various folders (Developer 2 GB, Music 8 GB, podcasts/TV 0.5 GB, other users 1 GB)in your user account: 12 GB
That totals crudely counted up ~ 370 GB for your user account.
But there is more, MacOS (35 GB), Applications folder for all users (not just your user Application folder) (35 to 50 GB), Library (system, not your user library) 10 GB ... plus other system files that are outside of your user area so they aren't showing in your listing ... add these in and it can come to ~ 100 GB more.
For grand total of > 475 GB, which agrees roughly with your screen which says 491GB out of 494 GB used.
So you have basically run out of space.
The utility DaisyDisk will give you a much more precise rendition of where your space is being used.
A Mac won't operate properly with 15%-20% free space, you have < 1% free space. So you are on the edge of a lot of trouble.
For one thing, review your Desktop and Downloads folders, those take 150 GB right there. I am sure much can be safely deleted. You can also move your 36 GB Pictures folder to an external drive, or simply use iCloud to store the full size originals with much smaller snapshots physically taking space on your Mac. Apple has detailed instructions for both those options. You can also save 7GB by using Messages in iCloud.
Your user Library has 100 GB. DaisyDisk would tell you why that is, but Mail and Messages are using 15 GB alone. I'm sure some of that 100 GB could be reduced.
In my earlier post I provided links that may help:
Free up storage space on Mac - Apple Support "The category named System Data (or Other) is a general category that measures the storage space used by all Apple and third-party files that don’t belong to any more specific category."
How to free up ‘System Data’ and other st… - Apple Community
freeing up storage space & system data - Apple Community