I've never heard of such an issue, and would have to assume that there was something wrong in the first place and secure erase made it worse. Did you [repair the hard drive with Disk Utility|http://support.apple.com/kb/TS1417] (or at least verify it) prior to doing the secure erase? If not, try that now. If there are problems, the computer may not have been able to correctly identify which space was actually free, and you may have just securely erased some small portions of the system.
As for JohnAllanWoods' suggestion, it seems unlikely to me, but then so many other things that have turned out to be true did as well. One suggestion, though... there's a quick and easy test to see if you need to do what he is suggesting. Just type the following in the Terminal:
ls -al /
The very first line and gets spit out (you'll have to scroll up to see it) should look like this:
drwxrwxr-t@ 31 root admin 1122 Nov 25 05:43 .
If it says something else where mine says "root" and "admin", then you'll need to run the command John gave you. Otherwise, there's no point in doing so, and mucking around with commands like that in the Terminal if you don't know what you're doing can be dangerous.... one typo can sometimes spell disaster.