There is no magic button called Clean Plate in After Effects. There are several displacement and differential effects that can be used if you have the clean plate.
The effect you're describing is possible in Motion; compositing the two shots can be done several different ways. Are you familiar with AE's Difference Matte? There is no such filter in Motion but there is in FCP. There are still ways to create it Motion, just takes some research.
from the AE manual:
*The Difference Matte effect creates transparency by comparing a source layer with a difference layer, and then keying out pixels in the source layer that match both the position and color in the difference layer. Typically, it’s used to key out a static background behind a moving object, which is then placed on a different background. Often the difference layer is simply a frame of background footage (before the moving object has entered the scene). For this reason, the Difference Matte effect is best used for scenes that have been shot with a stationary camera and an unmoving background.*
bogiesan