You can do this using Quicktime Pro 7:
Open MOV file in QT Pro (QT 7.6.6)
Window -> Show Movie Properties
select "Video Track"
select "Visual Settings" from lower window
check "Preserve Aspect Ratio"
Click on appropriate rotation icon (MOV rotates!)
Click back on the open MOV in Player Window
FILE -> Save
You can also do this using TransformMovie, available here:
http://www.macupdate.com/info.php/id/21859
Also, MPEG Streamclip can rotate video while maintaining the aspect ratio as well as the interlacing when converting to DV, which is what iMovie prefers as an input:
http://www.apple.com/downloads/macosx/video/mpegstreamclip.html
There is also a plug-in for iMovie from GeeThree called rotate/scale that might do the job:
http://geethree.com/slick/index.html
Further useful information here:
http://www.sjoki.uta.fi/~shmhav/SVCDon_a_Macintosh.html#vert-horizrotate
http://www.sjoki.uta.fi/~shmhav/SVCDon_aMacintosh.html#43-169