Unless your audio recorder is driven by a proper timecode clock, there is no way you are going to keep your recordings in sync. You might get lucky a few times, but that's mostly luck. Even weak batteries in the audio recorder can slow your audio.
This is only going to result in a tiny drift at worst, even over a long duration. If the recorders are both digital, you're more likely than not to "get lucky." Sample accurate? No. Frame accurate? probably, or at least close enough that nobody will notice. ****, there was no timecode clock on my 16mm camera, just a crystal to govern the motor speed. it never had a problem staying in dead-on sync with either a nagra or a DAT recorder, neither of which had timecode.
If someone is noticing drift, it's probably pretty bad, and it's most likely because of sample or frame rate mismatches.
My question is - How long is the clip, and how far out of sync is it? Karl, If you can give a ballpark number, it should be possible to guess at which kind of problem you have.
One that's bit us repeatedly is having the wrong Easy Setup selected when importing audio into FCP. If the Easy Setup is PAL, for example, but you're working on an NTSC project most things just work fine, but the audio import happens at the PAL frame rate and causes pretty severe drift over time.