Does the amount of apps on the menu bar or folders on the desktop have an effect of the performance?
When you say "menu bar" - you mean at the top of the screen or the dock? The menu bar at the top can be "personalized", but genrally, it's best to leave the default system icons there. The dock, however, has no limits - as long as space allows. I have 62 icons in the dock with my most used apps, files, and folders - it is primarily how I access anything. As for folders on the desktop - there are differing points of view: one is that every folder is treated like an app by the Finder when you boot up or restart, so it can take more time because it has to "open" all those items. Personally, I like my desktop as uncluttered as possible - I only "park" a few items there temporarily until I file, answer, work on, or whatever and then put them where they belong. I don't run my machine from the desktop - that is just the "gateway" to get you where you want to go.
You might also want to check in your Accounts Pane in System Preferences how many items you have set there to start at login - do you need them? That slows down the computer at startup as well. If not, delete them from that list.
Okay, so it seems you have plenty of hard drive space; however, it won't hurt to get rid of the 13+ GB in your trash. I would also keep track of your pics,music, videos, etc - you have quite a chunk there. For now, that is fine; however, when those files become even larger, I'd consider moving the iMovie, iTunes, and iPhoto libraries to an external hard drive permanently, freeing up space.
Do you generally shut down your Mac or let it sleep overnight?
Have you repaired Permissions lately (or ever)?