Q1: How do I know if conversion is needed?
A1: If the MKV file contains H.264 video up to and including 720p resolution, has a frame rate of 30 fps or less, uses the Main Profile level 3.1 with AAC-LC audio with a data rate up to 160 Kbps per channel and sampling rate up to 48 KHz in stereo, then the audio and video data would be compatible with the current iPod Touch, iPhone 4, iPad, iPad2, and/or TV device and not require re-compression of the data. Basically, you have to check to see what compression formats the MKV file contains using your system or media player Info/Inspector window. Checking profile and level would usually require a third-party app like VideoSpec.
Q2: If conversion is not needed, how do I put it in "compatible container".
A2: I would normally use the "Save As..." option in QT 7 Pro to place the data in an MOV file container or the same option in MPEG Streamclip to place the data in an MOV or MP4 file container. I also understabd that Subler can be used to place the data in an M4V file container. Each of these file containers is compatible with the devices previously mentioned.
Q3: if conversion is needed, what programs do you recommend, and to what format?
A3: About the only MKV files I use are 1080p content (H.264/AC3/Chapter or H.264/DTS/Chapter data) extracted from my BD video library. In this case I use HandBrake to convert the 1080p content to PAR encoded 720p H.264/AC3/AAC/Chapter files for my iTunes library.
