I was going through the description in the link you posted but could not find a correspondig .apfile . Actually I did not find any apfile. The format might have changed with version 3.2.2
O yes, there are indeed some changes: sorry for sending you on a wild goose chase 😊
When you open the Aperture Library with ctrl-click - "Show Package Contents" you will see a file ApertureData.xml. That file is the index to all images in your Library. To open it you need a texteditor, that can read XML, like Xcode or TextWrangler.
I just opened my Library with Textwrangler and searched for a filename for one of my images "Lange Anna"
I found the following representation of the tags:
<key>zrFXA1HHS0Gns45bMVeGMA</key>
<dict>
<key>Caption</key>
<string>Lange Anna, Helgoland</string>
<key>Comment</key>
<string>Lange Anna, Helgoland 2008</string>
<key>ImagePath</key>
<string>/Users/dreschle/Pictures/ApertureScreensaverAuswahl.aplibrary/Previews/ 2010/02/17/20100217-200045/zrFXA1HHS0Gns45bMVeGMA/Lange Anna, Helgoland.jpg</string>
<key>MediaType</key>
<string>Image</string>
<key>ModDateAsTimerInterval</key>
<real>288130088.69</real>
<key>ThumbPath</key>
<string>/Users/dreschle/Pictures/ApertureScreensaverAuswahl.aplibrary/Previews/ 2010/02/17/20100217-200045/zrFXA1HHS0Gns45bMVeGMA/thumb_Lange Anna, Helgoland.jpg</string>
<key>latitude</key><real>54.18828203</real>
<key>longitude</key><real>7.86990167</real>
</dict>
This file does not contain references to the Masters, only to the Previews and Thumbs.
These cryptic codes are folder names: zrFXA1HHS0Gns45bMVeGMA, you can find them in the package, and these Folders contain the Previews and Thumbs.
References to the Versions and Masters are now inside the Database/Versions folder, one folder for each Master/Versions set, containing files named Master.apmaster and Version-0.apversion, Version-1.apversion, etc.
But these are now binary files and I would not dare to patch those files, unless you are really desperate. Maybe you can reimport your missing Master, let Aperture recreate the Master.apfile and then replace the old Master.apfile with it. But it seems to be safer by far to follow Frank Caggiano's route.
Regards