Unable to update any software that requires a reboot.
When my old mbp broke down I migrated all my files using Time Machine. At first I had some issues with multiple accounts but since that was resolved everything has been running smoothly. Recently though, I discovered that when I tried to update Safari to 5.1.2, it appeared as if the installation went all right but when the system had rebooted the application was still on my software update list. On that list were also several firmware updates as well as minor updates for applications like iTunes. In fact, I could see that no automatic updates had gone through as planned since I bought my new computer last spring. The list was empty.
I tried to install all updates that didn't require a rebooting of the mbp and this went very well. However, when I tried to install the updates for firmware and Safari, my computer didn't even ask me for my password but skipped immediately to rebooting. When it fired up again, none of the updates had been installed but were still on the list for available updates.
Another thing that I've discovered while googling for a solution to my problem is that my disk permissions are corrupted in some way. I've tried to use Disk Utility to repair my disk permissions and it changes the permissions of about a dozen of files. Immediately after having been repaired though, if I run another verification scan, these same files will show up again as having the incorrect permissions.
Are these problems related? Does anyone know how to fix either of them? I'm thankful for any help at all.
edit: It might be helpful to know that I'm on a 13" mbp (early 2011) running OS X v. 10.6.8