You can delete the email account from your iPhone, or turn contacts off for over the air syncing with the account settings on your iPhone. When doing the latter, you should be prompted to store the contacts locally on your iPhone.
When you did the sync how?
There is no manual syncing for contacts with an iCloud account on an iPhone.
Are you syncing contacts direct with the Address Book on your Mac via the iTunes sync process in addition to syncing contacts over the air with your iCloud account on your iPhone? If so, the contacts on your iPhone will be duplicated with a warning message provided under the Info tab for your iPhone sync preferences with iTunes.