'Repair Permissions' doesn't repair
Running latest version of Lion on a 2010 macbook pro.
I ran Repair Permissions from Disk Utility, and it reported that it repaired hundreds of incorrect permissions.
I ran it again a week later, and it again reported that it repaired hundreds of incorrect permissions. So I ran it again straight away, and it again reported that those same permissions were not as they should be. So it seems that it is not repairing anything at all, despite what it says.
So why is it doing this, and what can I do about it? As far as I can tell, there is nothing obviously wrong with the way the computer is running. But there is obviously something wrong with the Disk utility app, and I'm concerned about whether it will work properly when I really need it to.
I'd be less concerned if it just said that it couldn't repair these permissions, but it is saying it repaired them when it didn't.
MacBook Pro, Mac OS X (10.7.3)