More proof that this is software/driver based.
I just made my system a triple boot.
In the process I observed a few interesting things.
First I'll repeat, that I recently downgraded from 10.8.5 to 10.6.7 and that has made the issue far less of an issue. Light dotting on the dock and sometimes a bit about it, but never more than that (I am not going to update my system any further until Apple says the update will specifically be clean of this issue). Running 10.8.5 the computer was almost unusable and crashed if I let it go to screensaver or sleep. 25% of the time, when starting VMWare the entire screen would become dotted and unresponsive and I'd have to do a hard reset. Starting some other programs would seemingly cause the dots to cover more area of the screen, until reboot.
I installed in bootcamp, windows 8.1. Was using bootcamp drivers 5.0.33. Did not notice any dots, however, I didn't like 8.1 so I only had it running for 45 minutes or so before I wiped it and installed Windows7. I installed the bootcamp drivers v 4.0.x. Ran like that for several days. No dots. I decided to give the 5.0.33 driver a try. Dots appeared within the day and have been reoccuring since. I've never seen the checkerboard effect like you guys are talking about in OSX, however, I got to see it in Windows after installing the 5.0.33 driver. Just like OSX, it is particularly bad when waking from sleep, hibernation or the screen saver. Sometimes, opening certain programs seems to trigger it. Another interesting point, is that I installed windows so I could play games on my laptop. Even if there are dots on the desktop or application windows, they all disappear when I go fullscreen into a game. I've never seen one dot EVER in a full screen game.
For OS number 3, I went with Kali Linux (Debian). I have installed no Apple drivers whatsoever (although I'm pretty sure there aren't any genuine Apple drivers made for Linux anyway). It was a pain in the *** to make it all work with rEFIt and bounce around entries with the MBR, but it boots clean. During my quest to make these 3 OS's work together, I had heard reports of the trackpad not working, missing drivers and other issues that made me think it wasn't going to be functional. However, upon boot in to Kali Linux, EVERYTHING worked. The kicker... no dots. None, I can't go a day without them on OSX 10.6 or Windows7x64(With Bootcamp drivers). It has been almost a week and no dots in Linux. I guarantee if Apple made a Linux display driver and I was dumb enough to install it, I'd have dots there too.
This is NOT a hardware issue. Purely software and drivers. Too bad we all don't live in the same area (at least I assume). I'm Self/Un -Employed. I would totally be down to go protest outside an Apple Store and call the news... Apple would hate that kind of publicity. We could all bring our Macs with screens full of dots. I'd even be up to go back to 10.8.5 just for the protest. I'm very serious. I'm in Escondido / San Diego, CA.