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Very slow external sata HD (lion)

Hi everybody!


It has been a while I am using a Netstor external HD (NR710C) 4x2TB WD Caviar black, RAID 10 (4TB total space, 2.71 Available, MacOS Extended Journaled).

It is conntected with the MacPro (MacPro 4,1 - early 2009) via a Sonnet Tempo SATA E2P pci card (drivers updated)

The OS installed is Mac OS X Lion 10.7.3 (11D50d) on a OCZ SSD 250GB


What happen is that randomly the access to the external RAID HD is very slow and while finder try to open subfolder the entire system freeze for a minute or so. Soemtimes the opened folders looks empty and I have to wait a minute or so to see the content.

When I used Snow Leopard (installed on a 1TB HD) the access was always fluid and fast.


What I've done to try to solve this issue is:

Unchecked the "Put the hard disk(s) to sleep when possible) in the Energy Saver panel.

Changed slot of the PCI card

Changed sata plug and cable

Performed all the check disk possible


It happens as well that the copy/move of big folder (up to 800GB) is not always as fas as it should be.

Also, working with Lightroom (cache is on the SSD hd) is really frustrating due the slow access to all the files.

I was used to work directly on the external sata HD but now seems like if I have to move everything back on an internal HD.


Is there any other check I can perform to address this issue?


So many thanks.


Luca

Mac Pro

Posted on May 2, 2012 3:57 AM

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Question marked as Best reply

Posted on May 2, 2012 4:40 AM

Get a card with more than the limits of the E2P which is going to limit your I/O - great for backups and such.


CallDigit PCIe 6G perhaps - I'd say Sonnet E4P but cost and issues sometimes with Lion.


Also, can I assume this worked with 10.6.8 better but not with Lion and new driver.

18 replies

May 2, 2012 7:13 AM in response to The hatter

The case has an eSata port and cable.


I've run a speed test (Xbench) on a 2TB internal drive and the external RAID.

Here is the result. It seems the speed is good.. is it correct?


System Info
Xbench Version1.3
System Version10.7.3 (11D50d)
Physical RAM16384 MB
ModelMacPro4,1
Drive TypeWDC WD2001FASS-00W2B0
Disk Test98.66
Sequential175.94
Uncached Write212.82130.67 MB/sec [4K blocks]
Uncached Write181.19102.52 MB/sec [256K blocks]
Uncached Read123.1636.04 MB/sec [4K blocks]
Uncached Read227.40114.29 MB/sec [256K blocks]
Random68.55
Uncached Write21.962.33 MB/sec [4K blocks]
Uncached Write441.42141.31 MB/sec [256K blocks]
Uncached Read155.381.10 MB/sec [4K blocks]
Uncached Read242.8645.06 MB/sec [256K blocks]


System Info
Xbench Version1.3
System Version10.7.3 (11D50d)
Physical RAM16384 MB
ModelMacPro4,1
Drive TypeNetstor H/W RAID10
Disk Test97.50
Sequential150.65
Uncached Write182.92112.31 MB/sec [4K blocks]
Uncached Write144.6281.83 MB/sec [256K blocks]
Uncached Read104.6330.62 MB/sec [4K blocks]
Uncached Read216.80108.96 MB/sec [256K blocks]
Random72.07
Uncached Write22.292.36 MB/sec [4K blocks]
Uncached Write205.8865.91 MB/sec [256K blocks]
Uncached Read360.622.56 MB/sec [4K blocks]
Uncached Read332.3761.67 MB/sec [256K blocks]

May 2, 2012 10:36 AM in response to Luca (LDF)

I believe that Nestor enclosure has a JMicron RAID chipset, in testing that chipset as implemented into a RAID chassis by another manufacturer we were getting near 200 MB/sec (sequential large file transfer tests) in a RAID5 over eSATA using a SATA card with a Silicon Image 3124 chipset. Drive model, as long as they are decent, like Seagate Barracuda or those WD Blacks, should not be a factor as the combined speed of that many drives is a lot faster than the RAID chipset is capable of. Ran same large file tests with same performance maximums - (200 MB/sec) running a simple RAID0 and a couple SSDs as well - to find the maximum throughput of the RAID chipset. Was faster over USB3 than eSATA.


The E2P SATA card uses a Silicon Image 3132 chipset. That chipset will top out at 150 MB/sec, or around that. So yeah, it will slow that RAID a little bit, 25%-30% anyway.


In a RAID10 you are effectively getting the striped speed of 2 drives. With those WD blacks, when the drives are empty, mechanical speed capability of 2 blacks would be up over 250 MB/sec. So the place where the speed limitation is when the drives are empty is first the 150 MB/sec E2P, then the 200 MB/sec JMicron RAID board.


With RAID10 you will show a significant slow down of the RAID as you fill up the space with data. The RAID10, because it uses fewer drives in a pair of stripes, than a RAID5 which uses basically all but one of the drives in a larger stripe, the RAID10 will show the effects of filling up the space much sooner than the RAID5. If your RAID is anywhere near full it will slow a lot!


I found the JMicon RAID quite functional. I would probably choose a RAID5 over a RAID10, but that is me. A faster SATA card will help a little, but part of the problem is the limitation of a RAID enclosure that is not really designed for speed. You are not going to make it a lot faster with a different card or a different RAID type.


Make sure you always maintain a backup of your data - RAID10 does not mean backed up. All it takes is a failure of the RAID software or hardware to lose everything. A separate copy is essential.


Rick

May 2, 2012 10:55 AM in response to Ricks-

I always gave the E2P more like 130MB/s in theory with less in practice. But that was on PCIe 1.1 and older drives at the time also.


Sounds like a good setup all around, but would not deliver what 4-port card and enclosure with - but maybe not worth the cost to do so depending on the needs. Or a 4x/8x card which I assume means getting into SAS too.


One new WD Black empty was 135MB/sec (internal, SATA II) or the speed of one drive is all you really get in that setup.

May 4, 2012 12:17 PM in response to Luca (LDF)

You may want to look at SATA 3 boards like the Highpoint RR2721 which can provide SATA 3 RAID performance (both internal and external) at sane prices.


I have a RR2720 in my Mac Pro 3,1 and get single spindle (JBOD) speeds of 145MB/sec using the Black Magic Design speed test. I'm setting up for a 6-spindle RAID 5 and a pair of eSATA ports. The RR2720 requires a few tricks, but the RR2721 and RR2722 should be plug-and-play.

May 6, 2012 11:14 AM in response to The hatter

Yes it is HPT, and I've have good experiences with them. (However, their tech support isn't for newbies...)


As far as I have been able to determine, a bootable 8-port SATA 3 board is close to $1000 and not internal. The (non-bootable) HPT I am using was about $170. The new HPT 2700 series have been getting good performance reviews. It's not the only solution out there but it is the cleanest and least expensive I've found.

May 6, 2012 2:44 PM in response to The hatter

The hatter wrote:


Macintosh Performance Guide: OWC’s new Mercury Accelsior PCIe SSD for Blistering-fast Drive Performance


Macintosh Performance Guide: OWC Accelsior PCIe SSD Reader Comment


One word: bootable


Also, Areca and ATTO.

Interesting...


In my application, two words: Tiny and expensive.


PCIe Slot 2 carries the RR2720 (which does not need to be bootable) to support the internal RAID. The Mac Pro 3,1 only has two PCIe 2.0 slots, so the Accelsior would be pointless. I'm planning on using an SSD on the on-board SATA II controller as a boot drive.


BTW, do you know of a PCIe 2.0 expansion chassis that is sanely priced?

May 28, 2012 9:48 AM in response to joevt

Total bandwidth is a function of slot speed, spindle count, and drive transfer rate. My RAID is not yet implemented because I only had Hitachi 3TB drives before the Thailand flooding (and ensuing shortages) drove prices completely out of sight. It will complete when prices normalize or I save enough money to buy 5 (maybe 6) Seagate 3TB drives (either way, cost is a significant issue.) I believe a RAID should use identical drives.


The Mac Pro 3,1 has two 16x PCIe slots and two 4x. My RR2720 is in slot 2 (16x) so it should perform as advertised. If you actually require speeds of 800MB/sec and beyond, don't take the free advice of anyone on this (or any other) forum; work with a professional and contract for a specific level of performance.


In the end you'll probably decide that reliability is your first criterion and all the speed you can get reliably is good enough. RAID 0 is like a racecar - sexy and exciting until it crashes. I'm looking for a RAID 5 that's fast enough (500-600MB/sec) to boost my overall throughput in disc-intensive work.

May 28, 2012 12:39 PM in response to RatVega™

Right. I was trying to say that if you're not going to make the RR2720 give you more than 600 MB/s, then it should perform almost as well in the PCIe 1.0 x4 slot so that you can use the PCIe 2.0 x16 slot for something else that will use the bandwidth, such as the Mercury Accelsior or an expansion box or another graphics card or whatever.


Using identical drives for a raid is a good idea. But you also need to make sure that all the drives perform similarly. It's possible to get a bad drive that underperforms.

Very slow external sata HD (lion)

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