Tried all of this step by step. The Repair Permissions came up with this:
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Repairing permissions for “Macintosh HD”
Reading permissions database.
Reading the permissions database can take several minutes.
Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/DVD.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/FRSettings.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/FRSources.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/Movies.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/Music.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/Photos.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/Podcasts.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/TV.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
Permissions differ on "System/Library/PrivateFrameworks/BackRow.framework/Versions/A/CodeResources", should be -rw-r--r-- , they are lrw-r--r-- .
Permissions differ on "Library/Frameworks/HPSmartPrint.framework", should be drwxrwxr-x , they are lrwxrwxr-x .
Permissions differ on "Library/Printers/hp/Utilities/HP Printer Selector.app/Contents/Resources/English.lproj/MainMenu.nib", should be drwxrwxr-x , they are -rwxrwxr-x .
Permissions differ on "Library/Printers/hp/Utilities/HP Printer Selector.app", should be drwxrwxr-x , they are lrwxrwxr-x .
Permissions differ on "Library/Printers/hp/Utilities/HP Printer Utility.app/Contents/Resources/English.lproj/MainMenu.nib", should be drwxrwxr-x , they are -rwxrwxr-x .
Permissions differ on "Library/Printers/hp/Utilities/HP Printer Utility.app/Contents/Resources/launcher", should be -rwxrwxr-x , they are lrwxrwxr-x .
Warning: SUID file "System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/Resources /DiskManagementTool" has been modified and will not be repaired.
Warning: SUID file "usr/sbin/pppd" has been modified and will not be repaired.
Warning: SUID file "usr/sbin/vpnd" has been modified and will not be repaired.
ACL found but not expected on "Applications/Utilities".
Stil nothing when I try to select system preferences... Now my Adobe Acrobat icon shows a ?... they're dying off one by one it seems.. Any more suggestions?