If you wish, you can customize the Dock yourself. All you need is an image editor that supports PNG with transparent background, such as Photoshop, Gimp, or Seashore.
-- Make a backup copy of Dock.app (at /System/Library/CoreServices) by copying it to some other location.
-- Right-click the original Dock.app and choose "Show Contents".
-- At /Contents/Resources, drag copies of the PNG files to a folder on the desktop. Do not dig into any of the inner directories or mess with any files except PNG.
-- Start customizing. For example, to make an element transparant, select all, delete, save.
-- When you think you have botched, er, completed your customizing, drag the new files back to the Contents/Resoruces and agree to Authenticate with password, and to replace all.
-- Open Disk Utility and Repair Disk Permissions.
-- In Terminal, type killall Dock (case sensitve) and press return... or...
-- Log out, log in.
If you do something really bad, you can replace the misfit Dock.app with your backup.
Software Update could reverse your handiwork, so if you like the new Dock.app, copy it to some "System stuff I customized" folder.