Hi Mac Macs!
I've just finished trying to fix the permissions and got a long log file, among it, I got:
2012-10-15 21:41:42 -0300: Permissions differ on "System/Library/PrivateFrameworks/SystemMigration.framework/Versions/A/CodeReso urces", should be -rw-r--r-- , they are lrwxr-xr-x .
2012-10-15 21:41:42 -0300: Permissions differ on "private/tmp", should be drwxrwxrwt , they are drwxr-xr-x .
2012-10-15 21:41:42 -0300: Group differs on "private/var/log/secure.log", should be 80, group is 0.
2012-10-15 21:41:42 -0300: Permissions differ on "private/var/log/secure.log", should be -rw------- , they are -rw-r--r-- .
2012-10-15 21:41:42 -0300: ACL found but not expected on "private/var/root/Library/Preferences".
2012-10-15 21:41:42 -0300: ACL found but not expected on "private/var/root/Library".
2012-10-15 21:41:43 -0300: ACL found but not expected on "private/var/root".
2012-10-15 21:41:43 -0300: Group differs on "tmp", should be 80, group is 0.
2012-10-15 21:41:43 -0300: Permissions differ on "tmp", should be lrwxr-xr-x , they are drwxrwxrwt .
2012-10-15 21:41:45 -0300: ACL found but not expected on "System/Library/CoreServices/Finder.app/Contents/Resources/CannedSearches/All Documents.cannedSearch/Resources/Documents.icns".
2012-10-15 21:41:45 -0300: ACL found but not expected on "System/Library/CoreServices/Finder.app/Contents/Resources/CannedSearches/All Documents.cannedSearch/Resources/English.lproj/InfoPlist.strings".
2012-10-15 21:41:45 -0300: ACL found but not expected on "System/Library/CoreServices/Finder.app/Contents/Resources/CannedSearches/All Documents.cannedSearch/Resources/English.lproj".
2012-10-15 21:41:45 -0300: ACL found but not expected on "System/Library/CoreServices/Finder.app/Contents/Resources/CannedSearches/All Documents.cannedSearch/search.savedSearch".
2012-10-15 21:41:46 -0300: Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
2012-10-15 21:41:46 -0300: Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/DVD.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
2012-10-15 21:41:46 -0300: Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/FRSettings.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
2012-10-15 21:41:46 -0300: Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/FRSources.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
2012-10-15 21:41:46 -0300: Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/Movies.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
2012-10-15 21:41:46 -0300: Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/Music.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
2012-10-15 21:41:46 -0300: Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/Photos.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
2012-10-15 21:41:46 -0300: Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/Podcasts.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
2012-10-15 21:41:46 -0300: Permissions differ on "System/Library/CoreServices/Front Row.app/Contents/PlugIns/TV.frappliance/Contents/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
2012-10-15 21:41:46 -0300: Permissions differ on "System/Library/PrivateFrameworks/BackRow.framework/Versions/A/CodeResources", should be -rw-r--r-- , they are lrwxr-xr-x .
2012-10-15 21:41:46 -0300: ACL found but not expected on "Users/Shared".
2012-10-15 21:41:51 -0300: Group differs on "private/var/log/cups", should be 0, group is 26.
2012-10-15 21:42:02 -0300: Permissions differ on "Applications/Utilities/Migration Assistant.app/Contents/CodeResources", should be -rw-rw-r-- , they are lrwxr-xr-x .
2012-10-15 21:42:17 -0300: Permissions differ on "Library/Internet Plug-Ins/JavaPluginCocoa.bundle/Contents/CodeResources", should be -rw-rw-r-- , they are lrwxr-xr-x .
-- AND ALSO :
2012-10-15 21:43:47 -0300: ACL found but not expected on "System/Library/CoreServices/Finder.app/Contents/Resources/CannedSearches/All Documents.cannedSearch/Resources/Info.plist".
2012-10-15 21:43:47 -0300: ACL found but not expected on "System/Library/CoreServices/Finder.app/Contents/Resources/CannedSearches/All Documents.cannedSearch/Resources/version.plist".
2012-10-15 21:43:47 -0300: ACL found but not expected on "System/Library/CoreServices/Finder.app/Contents/Resources/CannedSearches/All Documents.cannedSearch/Resources".
2012-10-15 21:43:47 -0300: ACL found but not expected on "System/Library/CoreServices/Finder.app/Contents/Resources/CannedSearches/All Documents.cannedSearch".
2012-10-15 21:43:58 -0300: Permissions differ on "System/Library/Frameworks/AppKit.framework/Versions/C/_CodeSignature/CodeResou rces", should be ?--------- , they are ---------- .
2012-10-15 21:43:59 -0300: Permissions differ on "System/Library/PrivateFrameworks/DotMacSyncManager.framework/Versions/A/_CodeS ignature/CodeResources", should be ?--------- , they are ---------- .
2012-10-15 21:43:59 -0300: Permissions differ on "System/Library/PrivateFrameworks/DotMacSyncManager.framework/Versions/A/Resour ces/DotMacSyncHelper.app/Contents/_CodeSignature/CodeResources", should be ?--------- , they are ---------- .
2012-10-15 21:43:59 -0300: Permissions differ on "System/Library/PrivateFrameworks/DotMacSyncManager.framework/Versions/A/Resour ces/dotmacsyncui.app/Contents/_CodeSignature/CodeResources", should be ?--------- , they are ---------- .
2012-10-15 21:43:59 -0300: Permissions differ on "System/Library/PrivateFrameworks/DotMacLegacy.framework/Versions/A/_CodeSignat ure/CodeResources", should be ?--------- , they are ---------- .
2012-10-15 21:43:59 -0300: Permissions differ on "System/Library/Extensions/IOUSBMassStorageClass.kext/Contents/_CodeSignature/C odeDirectory", should be ?--------- , they are ---------- .
2012-10-15 21:43:59 -0300: Permissions differ on "System/Library/Extensions/IOUSBMassStorageClass.kext/Contents/_CodeSignature/C odeResources", should be ?--------- , they are ---------- .
2012-10-15 21:43:59 -0300: Permissions differ on "System/Library/Extensions/IOUSBMassStorageClass.kext/Contents/_CodeSignature/C odeSignature", should be ?--------- , they are ---------- .
2012-10-15 21:43:59 -0300: Permissions differ on "System/Library/SystemProfiler/SPDisplaysReporter.spreporter/Contents/_CodeSign ature/CodeResources", should be ?--------- , they are ---------- .
2012-10-15 21:44:00 -0300: Warning: SUID file "usr/libexec/load_hdi" has been modified and will not be repaired.
2012-10-15 21:44:00 -0300: Warning: SUID file "usr/libexec/authopen" has been modified and will not be repaired.