For ANYONE who wants to understand and learn more about Facebook's cookies can read about it through the following link. For everyone questioning the cookies from Facebook and thinking there is something fishy going on, let me explain...
http://www.facebook.com/full_data_use_policy
Since most people block 3rd party cookies, the trend for most companies is to present their cookies as 1st party cookies. Any website that uses any Facebook technology (such as a "like" button), IS posting a 1st party cookie to your browser, regardless of whether or not you utilitze anything to do with Facebook. Their certificate MUST also be verified the moment the page loads because things like the "like" function, does not redirect your web browsing. So in this case, Facebook updated their certificate, and it didn't match what was previously noted.
What this whole thing has done is shined some light on what Facebook does on 3rd party websites.
In their "Full Data Use Policy", it states, "We receive data whenever you.... visit a site with a Facebook feature (such as a social plugin), sometimes through cookies. This may include the date and time you visit the site; the web address, or URL, you're on; technical information about the IP address, browser and the operating system you use; and, if you are logged in to Facebook, your User ID."
So... can you stop this in Safari? Not really. Deleting the cookies is rather futile. As soon as you revisit the site(s) that gave you a FB cookie, you'll get another one. Blocking all cookies (regardless of origin) isn't great either because it will mess up your browsing of some websites (particularly the ones you log into). And there is no way (that I'm aware of) that allows you to block site specific cookies (since Facebook is presenting their cookies as a "1st Party", and using the "block 3rd party cookies" option doesn't make a difference).
What Apple needs to give us is an UPDATE to allow for blocking site specific cookies....
So what can you do??? ~ If it really, really bothers you... Stop using Safari and switch to Firefox for Mac as you can block site specific cookies (among other things).
Learn more about that here:
http://support.mozilla.org/en-US/kb/block-websites-storing-site-preferences
Hope that helps. :-)