I have an ipod touch 4th gen. Can anybody help with ghost files?

Here is my problem: I added an equalizer program called "Louder Logic", It worked great until I needed to delete most of my Loaded CD's, to create space. I made the mistake of deleting the Louder Logic CD file first, which created these Ghost Files in the Apple CD file. The files appear, but are not bolded,and cannot be played. I tried deleting all music files and reseting the ipod, but the ghost files are still in the apple program. I would appreciate some help if anyone else made this same mistake.