I followed this process and worked great - nice and organized. The only problem however is when I play a song from my iTunes library, it moves it back to the original structure: iTunes library > artist > album > song.
This only happens with music - no other iTunes content is affected.
(I'm on iTunes 10.5.3 on osx 10.6.8. )
It's now been 3 days, and hasn't recurred while it typically would've previously - so I'm hoping that this is no longer an issue.
- iTunes 11.0.1, Mac OS 10.8.2
- all available updates applied
- File>Library>Organize Library - "Consolidate Files" and "Reorganize files in the folder 'iTunes Media'" checked and processed
- iTunes Preferences>Advanced Preferences - "Keep iTunes Media Folder Organized" checked