I wondered about updating the apps through iTunes, so looked on the Apps tab on the sidebar (you have to chose to view the sidebar in iTunes 11) and it showed about 260 updates waiting to be downloaded. I never update this way and had assumed that the apps would be updated in iTunes when they were updated and synced on my iPhone and iPad, but evidently not. It took several hours to download them and I'm now syncing. The number of apps showing as waiting to be updated on the iPhone has gone down from 15 to 4, but it also seems to be updating other things including re-syncing all my music. It also added back an app I had deleted from my iPhone previously so be aware this may happen. I'll keep y'all posted on my progress.