I will be a little more specific about what is going on because what I am trying to do now and have been doing in the past are a little different then what you are talking about.
I will have a quicktime movie (.mov) file that I have created in After Effects or Final Cut Pro or Avid Media Composer. This Quicktime movie will either have ProRes 4.2.2 or Animation codec applied to it when it is output from my Editing App. This files will not me reference movies but Self Contained meaning I could take that .MOV file, throw it on a drive take it to another system where the original source media used to create the .MOV file is not contained and it will play.. Audio and Video are both contained in this file. sometimes though there is no audio since I am not using any.
I will then take this .MOV file into compressor I have compressor transcode the Video portion of the file into a .m2v file. For the problem I am having lets just throw out the whole audio thing, since I am not using the audio. I am not even telling compressor to add any audio into the m2v file so it is just a video only stream.
Now after some further investigation here is where it is really weird.
so I have a preset that I set up for making these specific .m2v files because there is a piece of hardware that my company uses that plays these m2v files back over our television channels.. these files need to be really small in size.. up until i purchased this new mac with QT 10.2 I had no problems viewing these really small files. By small I mean they are under 30kb. they are usually a 2 frame video file, they are also under 30kb once run through compressor.
Here is the weird thing. When I playback a 30sec file that I create with the same preset it plays fine. When I try to open the files i create that are 2 frames they either come up black with a weird thing on the interface that looks like a 3/4 circle with an arrow pointing to the left and a 30 in the center (which what the devil is that) or it says the file cannot be opened.
So I am at a total loss since I never had this problem on my old mac running 10.6.7 and QT 10.0
Hopefully I have explained this problem clearer.
Thanks
-D