Jim-
If you look for them on eBay, the ones that were sold as ATTO cards have the second internal connector in place; the ones that shipped in Macs have the connector position, but the holes are filled with solder. This was done to reduce the cost. It is really tedious to suck the solder out of all those holes and repopulate that connector to get a second internal LVD bus, so no one would ever do it.
I think the history of it was that Apple used the Express PCI PSC in the original Server G3, but wanted it really cheap, so ATTO agreed to make an Apple-branded firmware for it. This meant ATTO would not have to service cards that had Apple firmware, so they could reduce the cost.
Apple later shipped an Adaptec card for their first Ultra2, then used the special ATTO UL2D with Apple firmware and second internal connector de-populated. When I bought my first new G4/400 with build-to-order SCSI, it had the special ATTO card in it.
Those Apple/ATTO UL2D cards are often available at less than US$30, and provide full Ultra2 LVD capability. They can be made to work in the beige G3, but when booted into Mac OS 9 (not Classic), the card conflicts with Foreign File Access in the CD Driver. Since a Server spends all its time in Mac OS X, this is not an issue for me.