Remove the Apple ID so it itself is not linked to any iPhone number.
Either turn off Messages on the iPhone or place it in Airplane Mode to Break with the server.
On launching Messages again check the iPhone number is ticked in Settings > Messages > Send and Receive.
Add the Apple ID.
Once this info appears on the Mac version via the Alert message, then you can add additional emails if required.
Please, if posting Logs, do not post any Log info after the line "Binary Images for iChat"
iMac 2.5Ghz 5i 2011 (Mountain Lion 10.8.2)
G4/1GhzDual MDD (Leopard 10.5.8)
MacBookPro 2Gb (Snow Leopard 10.6.8)
Mac OS X (10.6.8),
Couple of iPhones and an iPad
"Limit the Logs to the Bits above Binary Images." No, Seriously