Linc,
This method appears to have worked.
I made a few backups using Time Machine and SuperDuper, with two of each created with the network disconnected.
Booted into Recovery and restored the drive from one of the Time Machine backups. It's been backing up for two weeks now and hasn't exhibited the previous behaviour.
Only two bits of mild weirdness, but they might have been related to the issue I had, so I'll provide some details:
- The first Time Machine backup after restoring was before I'd run any apps such as Mail or Safari and to an external drive. Time Machine of course had to do a deep event scan. It found only 1,666 files totalling 180.5MB needing backup, then took 4 hours after which it said it copied 1,567,406 files totalling 181.3MB. Log extract below (Log 1). I surmise that the content of the files wasn't different, but perhaps attributes or something else might have been.
- The second Time Machine backup was to the Time Capsule. Still hadn't run anything of note. Again, Time Machine did a deep event scan, but it took a very suspicious zero milliseconds. This time, despite the backup on the Time Capsule being supposedly almost identical to the backup on the external drive, Time Machine found 1,567,361 files totalling 94.36GB requiring backup. After compacting and removing old backups to free space, Time Machine completed the backup in about 10.5 hours, indicating it did indeed copy a lot of data, and reported backing up 1,567,362 files totalling 89.73GB. Then the post-backup thinning took 3 hours deleting one backup of only 3.2GB and the backup verification failed. A later verification passed. Log extract below (Log 2).
Thank you very much for your help. Would be nice if Apple fixed the root cause if this.
regards - David
Log 1
6/06/13 12:23:19.218 PM com.apple.backupd[456]: Deep event scan at path:/ reason:must scan subdirs|new event db|
6/06/13 12:23:19.746 PM com.apple.backupd[456]: First backup after disk inheritance for / - complete scan required
6/06/13 12:51:37.529 PM com.apple.backupd[456]: Finished scan
6/06/13 12:52:38.133 PM com.apple.backupd[456]: Found 1666 files (180.5 MB) needing backup
6/06/13 12:52:38.803 PM com.apple.backupd[456]: 5.34 GB required (including padding), 111.27 GB available
6/06/13 1:23:19.491 PM com.apple.backupd[456]: Copied 54 MB of 180.5 MB, 46288 of 46288 items
6/06/13 2:23:20.357 PM com.apple.backupd[456]: Copied 54.1 MB of 180.5 MB, 424383 of 424383 items
6/06/13 3:23:20.480 PM com.apple.backupd[456]: Copied 58.3 MB of 180.5 MB, 849710 of 849710 items
6/06/13 4:23:20.835 PM com.apple.backupd[456]: Copied 58.4 MB of 180.5 MB, 1016041 of 1016041 items
6/06/13 5:10:06.108 PM com.apple.backupd[456]: Copied 1567406 files (181.3 MB) from volume Macintosh HD.
Log 2
6/06/13 5:20:16.535 PM com.apple.backupd[456]: Forcing deep traversal on source: "Macintosh HD" (mount: '/' fsUUID: 2CC8389F-D5BE-3784-A0E1-EA174609E8DF eventDBUUID: 3162CE9B-83A2-43CC-A825-5AA96D04A3A6)
6/06/13 5:20:16.915 PM com.apple.backupd[456]: Deep event scan at path:/ reason:must scan subdirs|require scan|
6/06/13 5:20:16.915 PM com.apple.backupd[456]: Finished scan
6/06/13 5:24:32.821 PM com.apple.backupd[456]: Found 1567361 files (94.36 GB) needing backup
6/06/13 5:24:38.696 PM com.apple.backupd[456]: 114.72 GB required (including padding), 54.57 GB available
6/06/13 5:25:30.711 PM com.apple.backupd[456]: Ejected Time Machine disk image: /Volumes/Time Capsule/David’s MacBook.sparsebundle
6/06/13 5:25:30.713 PM com.apple.backupd[456]: Compacting backup disk image to recover free space
6/06/13 5:31:04.899 PM com.apple.backupd[456]: Completed backup disk image compaction
6/06/13 5:31:04.900 PM com.apple.backupd[456]: Starting manual backup
6/06/13 5:31:05.009 PM com.apple.backupd[456]: Network destination already mounted at: /Volumes/Time Capsule
6/06/13 5:43:07.764 PM com.apple.backupd[456]: Disk image /Volumes/Time Capsule/David’s MacBook.sparsebundle mounted at: /Volumes/Time Machine Backups
6/06/13 5:43:07.782 PM com.apple.backupd[456]: Backing up to: /Volumes/Time Machine Backups/Backups.backupdb
6/06/13 5:43:23.106 PM com.apple.backupd[456]: Forcing deep traversal on source: "Macintosh HD" (mount: '/' fsUUID: 2CC8389F-D5BE-3784-A0E1-EA174609E8DF eventDBUUID: 3162CE9B-83A2-43CC-A825-5AA96D04A3A6)
6/06/13 5:43:24.085 PM com.apple.backupd[456]: Deep event scan at path:/ reason:must scan subdirs|require scan|
6/06/13 5:43:24.085 PM com.apple.backupd[456]: Finished scan
6/06/13 5:47:26.297 PM com.apple.backupd[456]: Found 1567362 files (94.36 GB) needing backup
6/06/13 5:47:36.413 PM com.apple.backupd[456]: 114.72 GB required (including padding), 66.97 GB available
6/06/13 5:56:48.285 PM com.apple.backupd[456]: Deleted backup /Volumes/Time Machine Backups/Backups.backupdb/David’s MacBook/2013-01-24-084104 containing 3.51 GB; 70.48 GB now available, 114.72 GB required
6/06/13 6:03:35.666 PM com.apple.backupd[456]: Deleted backup /Volumes/Time Machine Backups/Backups.backupdb/David’s MacBook/2013-01-31-111201 containing 825 MB; 71.31 GB now available, 114.72 GB required
6/06/13 6:40:21.208 PM com.apple.backupd[456]: Deleted backup /Volumes/Time Machine Backups/Backups.backupdb/David’s MacBook/2013-02-07-014507 containing 35.06 GB; 106.37 GB now available, 114.72 GB required
6/06/13 6:50:06.398 PM com.apple.backupd[456]: Deleted backup /Volumes/Time Machine Backups/Backups.backupdb/David’s MacBook/2013-02-14-231957 containing 959.6 MB; 107.33 GB now available, 114.72 GB required
6/06/13 6:56:03.880 PM com.apple.backupd[456]: Deleted backup /Volumes/Time Machine Backups/Backups.backupdb/David’s MacBook/2013-02-21-092232 containing 555.7 MB; 107.89 GB now available, 114.72 GB required
6/06/13 7:17:39.672 PM com.apple.backupd[456]: Deleted backup /Volumes/Time Machine Backups/Backups.backupdb/David’s MacBook/2013-02-28-113941 containing 10.59 GB; 118.48 GB now available, 114.72 GB required
6/06/13 7:17:39.672 PM com.apple.backupd[456]: Deleted 6 backups containing 51.51 GB total; 118.48 GB now available, 114.72 GB required
6/06/13 7:17:40.348 PM com.apple.backupd[456]: Copied Zero KB of 94.36 GB, 0 of 1567362 items
6/06/13 8:17:40.825 PM com.apple.backupd[456]: Copied 9.75 GB of 94.36 GB, 241550 of 1567362 items
6/06/13 9:17:41.730 PM com.apple.backupd[456]: Copied 16.2 GB of 94.36 GB, 481855 of 1567362 items
6/06/13 10:17:41.853 PM com.apple.backupd[456]: Copied 20.23 GB of 94.36 GB, 607105 of 1567362 items
6/06/13 11:17:42.124 PM com.apple.backupd[456]: Copied 23.32 GB of 94.36 GB, 689513 of 1567362 items
7/06/13 12:17:48.162 AM com.apple.backupd[456]: Copied 24.64 GB of 94.36 GB, 766476 of 1567362 items
7/06/13 1:17:48.231 AM com.apple.backupd[456]: Copied 31.94 GB of 94.36 GB, 903339 of 1567362 items
7/06/13 2:17:48.458 AM com.apple.backupd[456]: Copied 35.05 GB of 94.36 GB, 1070656 of 1567362 items
7/06/13 3:17:48.552 AM com.apple.backupd[456]: Copied 43.2 GB of 94.36 GB, 1118028 of 1567362 items
7/06/13 4:17:48.754 AM com.apple.backupd[456]: Copied 51.03 GB of 94.36 GB, 1158272 of 1567362 items
7/06/13 5:17:49.716 AM com.apple.backupd[456]: Copied 75.23 GB of 94.36 GB, 1513275 of 1567362 items
7/06/13 5:55:54.306 AM com.apple.backupd[456]: Copied 1567362 files (89.73 GB) from volume Macintosh HD.
7/06/13 5:55:55.360 AM com.apple.backupd[456]: Using file event preflight for Macintosh HD
7/06/13 5:55:59.595 AM com.apple.backupd[456]: Will copy (4.2 MB) from Macintosh HD
7/06/13 5:55:59.606 AM com.apple.backupd[456]: Found 869 files (55.9 MB) needing backup
7/06/13 5:55:59.608 AM com.apple.backupd[456]: 3.87 GB required (including padding), 14.22 GB available
7/06/13 5:57:00.690 AM com.apple.backupd[456]: Copied 6955 files (47.9 MB) from volume Macintosh HD.
7/06/13 5:57:04.104 AM com.apple.backupd[456]: Created new backup: 2013-06-07-055700
7/06/13 5:57:16.734 AM com.apple.backupd[456]: Starting post-backup thinning
7/06/13 9:06:07.514 AM com.apple.backupd[456]: Deleted /Volumes/Time Machine Backups/Backups.backupdb/David’s MacBook/2013-03-07-090104 (3.2 GB)
7/06/13 9:06:07.514 AM com.apple.backupd[456]: Post-back up thinning complete: 1 expired backups removed
7/06/13 9:06:11.532 AM com.apple.backupd[456]: Backup completed successfully.
7/06/13 9:06:25.174 AM com.apple.backupd[456]: Ejected Time Machine disk image: /Volumes/Time Capsule/David’s MacBook.sparsebundle
7/06/13 9:06:25.649 AM com.apple.backupd[456]: Ejected Time Machine network volume.
7/06/13 9:06:25.652 AM com.apple.backupd[456]: Running automatic backup verification.
7/06/13 9:06:25.760 AM com.apple.backupd[456]: Attempting to mount network destination URL: afp://Laure;AUTH=SRP@Hislops-Time-Capsule.local/Time%20Capsule
7/06/13 9:06:26.999 AM com.apple.backupd[456]: Mounted network destination at mount point: /Volumes/Time Capsule using URL: afp://Laure;AUTH=SRP@Hislops-Time-Capsule.local/Time%20Capsule
7/06/13 9:06:30.360 AM com.apple.backupd[456]: Verifying backup disk image.
7/06/13 9:28:07.305 AM com.apple.backupd[456]: CopyHFSMeta failed with termination status: 5
7/06/13 9:28:07.312 AM com.apple.backupd[456]: Backup verification incomplete!