Gulp, I never use TM myself, but...
Have you looked through Pondini's extensive TM help site?
http://Pondini.org/TM/FAQ.html
http://pondini.org/TM/Troubleshooting.html
Can't imagine something not being covered there.
As far as recovery, I don't think it'll help with a single corrupt file, but...
It may be possible to recover some erased ones, but you must quit using the Computer immediately, because the OS will think it can write to those freed blocks on the disk.
Either boot this one in Target mode...
http://support.apple.com/kb/HT1661
And recovering from another Mac, or booting this Mac from another HDD, then using Data Rescue...
http://www.prosofteng.com/products/data_rescue.php
(Has a Free Demo to see if it could or not, but you'll need another drive to recover to).
rccharles on file recovery...
"Stellar Phoenix Macintosh - Mac data recovery software, recovers data from damaged, deleted, or corrupted volumes and even from initialized disks."
They have a trial version, so I guess you can see if your data can be recovered...
http://www.stellarinfo.com/mac-data-recovery.htm
FileSalvage is an extremely powerful Macintosh application for exploring and recovering deleted files from a drive or volume. FileSalvage is designed to restore files that have:
* been accidentally deleted.
* become unreadable due to media faults.
* been stored on a drive before it was re-initialized/formatted.
http://subrosasoft.com/OSXSoftware/index.php?main_page=product_info&products_id= 1
http://discussions.apple.com/thread.jspa?messageID=11073082#11073082
Your best bet for repairing you HD is DiskWarrior from Alsoft...
http://www.alsoft.com/DiskWarrior/