That may not be the best approach (see below).
Format the drive for a Mac (see #1 in Using Disk Utility if you're not sure how).
Create the folders you want on it.
Open a second Finder window and drag what you want from one to the other.
If you only copy the stuff listed, you'll lose your AddressBook, Mail, Calendars, preferences, and probably all sorts of other things.
A better option might be to back up your entire system, either with Time Machine or one of the "cloning" apps. Then you can restore selectively from TM, or copy selectively from the clone.