I can confirm that there is a RELATED problem with non-raided drives:
I use many WD black caviar drives for backup, via usb (no eSata on my $4,000 Mac desktop, thanks Apple!)
I typically have three extrenal drives for each files group, and backup by hand. However, the "DS.store" problem (thanks, Apple!) is making me insane, so yesterday I decided to try CCC to "update" one of my drives:
note: I checked with a CCC tech, before proceding, to see if this would be safe. I was told yes. He was wrong.
-------------------------
Drive #1 had all my data. Drive #3 had just be fully erased, and then had all of the data from drive #1 cloned onto it, using CCC. This worked fine.
Drive #2 already had about 99% of the data from drive #1 on it, tranferred by hand. (by dragging.) I had CCC set to NOT erease anything that differed on the destination drive, so it SHOULD have simply added what was missing.
I started the procedure, and went to have coffee. When I came back, I noticed that, instead of simply adding the missing 2-3 GB of data to disk #2, CCC had already transferred about 200 GB ! I looked at Drive #2 and saw that, while all the folders were still there, about 1/3 of my data had been wiped out. The folders were empty!
@#%%@$#%
So now I have to drag back all that data, which thanks to the Mac's DS.store problem, will take me all day.
Additonally, if any files have gone bad on Disk #1, and if I didn't have Disk #3, they would be gone forever.
Good Lord.