juan, QTX doesn't uninstall, since it's one of the core apps. One or more of the updates you took, updated QuickTime - did you take iTunes? That carries a QT-heavy component set and if it determined that your QuickTime was too old, it would have updated that underneath the iTunes install.
Since the QT is likely new, it broke the links to the codecs you had installed. Your best bet now is to just take the last QuickTime 7 download and install fresh codec packs.
Here is the list of downloads.
Start with QT 7.6.6. - http://support.apple.com/kb/DL923
Get Perian, and install it. - http://perian.org
then VLC, - http://videolan.org
DivX - http://divx.com - and the
Flip4Mac package from Telestream - http://www.telestream.net/flip4mac/
A52/AC3 downloader: https://www.macupdate.com/app/mac/21875/a52codec - In this installer package there is an audio A52Codec.component. DO NOT USE IT! Throw it out and use the one that is linked below.
This is what I've put into my system and so far I've gotten every file to run fine, even my oldest videos.
These are codecs you should see.
In System/Library/QuickTime
AppleIntermediateCodec.component
AppleMPEG2Codec.component* (*optional if you've bought it)
DivX Decoder.component
Flip4Mac WMV Advanced.component
Flip4Mac WMV Export.component
Flip4Mac WMV Import.component
In your Home/Library/QuickTime/
AC3MovieImport.component (you may or may not want this component, in some instances it causes conflicts. In my system, it doesn't. Who knows why? I don't.)
Perian.component
For AC3 sound that is in most .mkv files, you need the A52Codec.component, this is the one you want, here:https://dl.dropboxusercontent.com/u/34821905/A52Codec.component.zip - unzip the file and put the component into the System/Library/Audio/Plug-ins/Components
Go back to your Perian settings and in the Audio Output button, set it to 'Multi Channel Sound' - Ignore the message Perian puts up and select it.
By doing a 'Get Info' on your files and where it says 'Open With' - default them to the QuickTime 7 program. Perian no longer will work with QuickTime Player so you must have QT 7.6.6 and set it so it is the default for all the filetypes you use.
It works perfectly with QT7. So far I've gotten ALL my old videos to play.
.avi, .mov (with the AC3 sound), .wmv, .flv, .mp4 and .m4v. all run fine as do all the older formats.
Good luck!