When booting from SSD I cannot see all the files on my HDD

Hi All,

I have installed an SSD in my SuperDrive port and made this my default boot drive. I am able to succesfully boot using the SSD with newly installed OS Mavericks. However once I've booted from the SSD my HDD only shows a handful of files but not my Home Folder with the majority of my files. When I restart and select to boot from the HDD I can see all of my files as I should. I can also see the SSD with the OS Mavericks installed. I'd like to boot from the SSD and run all applications from it while simply opening my HDD to view any stored files, music, or pictures. Does anyone know why my HDD isn't showing everything when bootign from the SSD?

Thanks - JT