I've had this since getting my Late 2013 rMBP back in November. I have tried to figure out what it is and so far I have narrowed it down to the following:
It occurs when using the 'Desktop' Hot Corner feature and only when one of the apps you have open slides off the top of your display i.e. upwards through the menu bar. It is not specific to any particular app, it occurs with whichever app window slides off the top of the menu bar when you use the 'Desktop' Hot Corner.
Annoying thing is that I don't know how to make it go away, I did however create a new user account on my MacBook recently and on that new account the issue was non-existent, so it would seem that it is some little bug that has managed to get its way into my user account rather than it being a bug on my copy of Mavericks, just wish I new which system file was the offending one, so I can get shut of it!
Anyone one else got any better solutions?