I have run the 720 iPad export on this movie too, and I see what you describe KT, the new export goes into iBA fine. I cannot do a larger export for iPad 2.
$ mediainfo FreeVoiceTalentRecap.m4v
General
Complete name : FreeVoiceTalentRecap.m4v
Format : MPEG-4
Format profile : Base Media / Version 2
Codec ID : mp42
File size : 280 MiB
Duration : 27mn 37s
Overall bit rate mode : Variable
Overall bit rate : 1 415 Kbps
Encoded date : UTC 2014-06-05 20:51:44
Tagged date : UTC 2014-06-05 21:04:14
Video
ID : 1
Format : AVC
Format/Info : Advanced Video Codec
Format profile : Main@L3.1
Format settings, CABAC : Yes
Format settings, ReFrames : 5 frames
Codec ID : avc1
Codec ID/Info : Advanced Video Coding
Duration : 27mn 37s
Bit rate : 1 206 Kbps
Width : 1 280 pixels
Height : 720 pixels
Display aspect ratio : 16:9
Frame rate mode : Constant
Frame rate : 30.000 fps
Color space : YUV
Chroma subsampling : 4:2:0
Bit depth : 8 bits
Scan type : Progressive
Bits/(Pixel*Frame) : 0.044
Stream size : 238 MiB (85%)
Encoded date : UTC 2014-06-05 20:51:44
Tagged date : UTC 2014-06-05 21:04:14
Color primaries : BT.709
Transfer characteristics : BT.709
Matrix coefficients : BT.709
Audio
ID : 2
Format : AAC
Format/Info : Advanced Audio Codec
Format profile : LC
Codec ID : 40
Duration : 27mn 37s
Bit rate mode : Variable
Bit rate : 205 Kbps
Maximum bit rate : 454 Kbps
Channel(s) : 2 channels
Channel positions : Front: L R
Sampling rate : 44.1 KHz
Compression mode : Lossy
Stream size : 40.5 MiB (14%)
Encoded date : UTC 2014-06-05 20:51:44
Tagged date : UTC 2014-06-05 20:52:15
[~]$ mediainfo FreeVoiceTalentRecap-qtx-ipad.m4v
General
Complete name : FreeVoiceTalentRecap-qtx-ipad.m4v
Format : MPEG-4
Codec ID : M4V
File size : 263 MiB
Duration : 27mn 37s
Overall bit rate : 1 334 Kbps
Encoded date : UTC 2014-06-14 17:13:11
Tagged date : UTC 2014-06-14 17:13:39
Video
ID : 2
Format : AVC
Format/Info : Advanced Video Codec
Format profile : Main@L3.1
Format settings, CABAC : Yes
Format settings, ReFrames : 5 frames
Codec ID : avc1
Codec ID/Info : Advanced Video Coding
Duration : 27mn 37s
Source duration : 27mn 37s
Source_Duration_LastFrame : 66ms
Bit rate : 1 206 Kbps
Width : 1 280 pixels
Height : 720 pixels
Display aspect ratio : 16:9
Frame rate mode : Constant
Frame rate : 30.000 fps
Color space : YUV
Chroma subsampling : 4:2:0
Bit depth : 8 bits
Scan type : Progressive
Bits/(Pixel*Frame) : 0.044
Stream size : 238 MiB (90%)
Source stream size : 238 MiB (90%)
Title : Core Media Video
Encoded date : UTC 2014-06-14 17:13:11
Tagged date : UTC 2014-06-14 17:13:39
Color primaries : BT.709
Transfer characteristics : BT.709
Matrix coefficients : BT.709
Audio
ID : 1
Format : AAC
Format/Info : Advanced Audio Codec
Format profile : LC
Codec ID : 40
Duration : 27mn 36s
Source duration : 27mn 37s
Bit rate mode : Constant
Bit rate : 123 Kbps
Nominal bit rate : 160 Kbps
Channel(s) : 2 channels
Channel positions : Front: L R
Sampling rate : 48.0 KHz
Compression mode : Lossy
Stream size : 24.4 MiB (9%)
Source stream size : 24.4 MiB (9%)
Title : Core Media Audio
Encoded date : UTC 2014-06-14 17:13:11
Tagged date : UTC 2014-06-14 17:13:39
(Excuse the formatting, I can't get past 'permission denied' or 'an error occured' when posting the formatted version from Terminal)