Maybe if you have not already read through this thread
So I got the GTX 980 "Mac Edition"
http://forums.macrumors.com/showthread.php?t=1838090
Last post right now from MacVidCards:
"Black screen.
I found the issue much more likely to come up with 3,1 Mac Pro. This is in fact why we don't list Thomas working in 3,1 when in fact they do but are much more prone to PCIE SSD issues.
If you read through the "NGFF PCIE SSD" thread you wi see several instances where people had issues with a boot drive being recognized as boot drive. This is where I got idea to simply change slots. I was only able to create the situation once in 4,1. I am running Sintech adapted xp941 and Apple SSD blades with I issues.
Typically changing slots or doing PRAM reset will fix. Keep in mind slots 3 & 4 are on a switch sharing same 4 lanes. You can't raid 3 & 4 and get better speeds. Has to be 2 & 3 or 2 & 4. My guess is that the "can't find boot drive" issue that PCIE SSDs have occasionally doesn't play well with our 980 EFI.
I have been able to fix every time rather easily on 4,1."