GarageBand not Recording Voice or Skype after update

I have been using Garage Band 6.2.2 to record my Podcast for over a year now and since the latest update I am now dead in the water. I use Soundfllower and Line-in to grab the Audio from Skype and my Samsung Mic to record in Garage Band. Now with all settings being the same Garage Band does not see any audio coming in. I can see Audio in system settings, Skype and in Line-in. Any Help would be appreciated.